Although currently classified as one widespread, highly variable species, recent phylogenetic research based on molecular characters has revealed a deep genetic divergence in the brook stickleback, suggesting that the species began to bifurcate approximately four million years ago. The two lineages were isolated in the Mississippi drainage (M group) and Atlantic drainage (A group), and have had minimal contact since that time, making this an excellent species in which to investigate the evolution of mate recognition systems and the extent of behavioural divergence in the absence of reinforcing secondary contact.